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Publications List

2022

  • Takemoto A,  Iwaki S ,  Duo Z ,  Yasumuro S ,  Kumada T (2022) Difficulty with the preceding visual search affects brain activity in the following resting period. Sci. Rep. 2022, Nov 3;12(1): 18545. doi: 10.1038/s41598-022-21624-3
  • Hettler F, Schreck C, Marquez SR, Engleitner T, Vilne B, Landspersky T, Weidner H, Hausinger R, Mishra R, Oellinger R, Rauner M, Naumann R, Peschel C, Bassermann F, Rad R, Istvanffy R, Oostendorp RAJ. (2022) Osteoprogenitor SFRP1 prevents exhaustion of hematopoietic stem cells via PP2A-PR72/130-mediated regulation of p300. Haematologica. 2022, Aug 11. doi: 10.3324/haematol.2022.280760. PMID: 35950533
  • Uribe SE, Sofi-Mahmudi A, Raittio E, Maldupa I, Vilne B. (2022) Dental Research Data Availability and Quality According to the FAIR Principles. J Dent Res. 2022 Jun 2:220345221101321. doi: 10.1177/00220345221101321. PMID: 35656591
  • Vilne B, Ķibilds J, Siksna I, Lazda I, Valciņa O, Krūmiņa A. Could Artificial Intelligence/Machine Learning and Inclusion of Diet-Gut Microbiome Interactions Improve Disease Risk Prediction? Case Study: Coronary Artery Disease. (2022)  Front Microbiol. 2022 Apr 11;13:627892. doi: 10.3389/fmicb.2022.627892. eCollection 2022. PMID: 35479632
  • Vilne B, Sawant A, Rudaka I. Examining the Association between Mitochondrial Genome Variation and Coronary Artery Disease. Genes (Basel). 2022 Mar 15;13(3):516. doi: 10.3390/genes13030516. PMID: 35328073

2021

  • Vilne B.*, Grantiņa-Ieviņa L.*, Ķibilds J.*, Malisevs A., Konvisers G., Makarova S., Pule P., Valcina O. (2019) Investigating Eukaryotic and Prokaryotic Community Diversity in Relation to the Presence of Legionella pneumophila and Free-Living Amoeba in Biofilms of Hot Water Pipelines of Apartment Buildings. Front. Water, 2021, Dec. https://doi.org/10.3389/frwa.2021.799840.
    *Joint first authors
  • Neiburga K. D.*, Vilne B.*, Bauer S., Bongiovanni D., Ziegler T., Lachmann M., Wengert S., Hawe J. S., Güldener U., Westerlund A. M., Li L., Pang S., Yang C., Saar K., Huebner N., Maegdefessel L., DigiMed Bayern Consortium, Lange R., Krane M., Schunkert H., von Scheidt M. (2021) Vascular Tissue Specific miRNA Profiles Reveal Novel Correlations with Risk Factors in Coronary Artery Disease. Biomolecules. 2021 Nov 12;11(11):1683. doi: 10.3390/biom11111683. PMID: 34827683
    *Joint first authors
  • Hinterdobler J., Schott S., Meesmann A., Steinsiek A.-L., Zimmermann A.-S., Wobst J., Vilne B., Jin H., Baecklund C.-S., Moggio A., Braster Q., Molitor M., Hristov H., Weber C., Wenzel P., Scheiermann C., Maegdefessel L., Soehnlein O., Libby P., Nahrendorf M., Schunkert H., Kessler T., Sager H. B. (2021) Acute mental stress drives vascular inflammation and promotes plaque destabilization in mouse atherosclerosis. European Heart Journal, 2021 Jul. https://doi.org/10.1093/eurheartj/ehab371
  • Zrelovs N., Ustinova M., Silamikelis I., Birzniece L., Megnis K., Rovite V., Freimane L., Silamikele L., Ansone L., Pjalkovskis J., Fridmanis F., Vilne B., Priedite M., Caica A., Gavars M., Perminovs D., Storozenko J., Savicka O., Dimina E., Dumpis U., Klovins J. (2021) First report on the Latvian SARS-CoV-2 isolate genetic diversity. Frontiers in Medicine, 2021 Apr. https://doi.org/10.3389/fmed.2021.626000
  • Nieminen P and Uribe SE (2021) The Quality of Statistical Reporting and Data Presentation in Predatory Dental Journals Was Lower Than in Non-Predatory Journals. Entropy 2021, 23(4), 468; https://doi.org/10.3390/e23040468
  • Schwendicke F, Singh T, Lee YH, Gaudin R, Chaurasia A, Wiegand T, Uribe SE, Krois J (2021) Artificial intelligence in dental research: Checklist for authors, reviewers, readers. Journal of Dentistry 107(103610). https://doi.org/10.1016/j.jdent.2021.103610.
  • Uribe SE, Innes N and Maldupa I (2021) The global prevalence of early childhood caries: A systematic review with meta-analysis using the WHO diagnostic criteria. Int J Paediatr Dent. 2021; 00: 1– 14. https://doi.org/10.1111/ipd.12783
  • Zambrano L. J. M., Karaduzovic-Hadziabdic K., Lonca Turukalo T., Przymus P., Trajkovik V., Aasmets O., Berland M., Gruca A., Telalovic J. H., Hron K., Klammsteiner T., Kolev M., Lahti L., Lopes M.B., Moreno V., Naskinova I., Org E., Paciência I., Papoutsoglou G., Shigdel R., Stres B., Vilne B., Yousef M., Carrillo de Santa Pau E., Claesson M., Moreno Indias I., Truu J. Applications of machine learning in human microbiome studies: a review on feature selection, biomarker identification, disease prediction and treatment. Front. Microbiol., 2021 Feb. https://doi.org/10.3389/fmicb.2021.634511
  • Moreno-Indias I., Lahti L., Nedyalkova M., Elbere I., Roshchupkin G., Adilovic M., Aydemir O., Bakir-Gungor B., Santa Pau E. C., D'Elia D., Desai M. S., Falquet L., Gundogdu A., Hron K., Klammsteiner T., Lopes M.B., Marcos-Zambrano L. J., Marques C., Mason M., May P., Pašić L., Pio G., Pongor S., Promponas V.J., Przymus P., Saez-Rodriguez J., Sampri A., Shigdel R., Stres B., Suharoschi R., Truu J., Truică C. O., Vilne B., Vlachakis D., Yilmaz E., Zeller G., Zomer A. L., Gómez-Cabrero D., Claesson M. J. Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions. Front. Microbiol., 2021 Feb. https://doi.org/10.3389/fmicb.2021.635781
  • Rusko J., Vainovska P., Vilne B., Bartkevics V. (2021) Phenolic profiles of raw mono-and poly floral honeys from Latvia. J. Food Compos. Anal. 2021 Jan. https://doi.org/10.1016/j.jfca.2021.103813
2015–2020
2020
  • Maldupa I, Sopule A, Uribe SE, et al. (2020) Caries prevalence and severity for 12-year-old children in Latvia. International dental journal in press: https://doi.org/10.1111/idj.12627
  • Montalban, E., Giralt, A., Taing, L., Nakamura, Y., Martin, C., de Pins, B., Pelosi, A., Goutebroze, L., Castell, L., Wang, W., Neiburga, K. D., Vestito, L., Nairn, A. C., Valjent, E., Hervé, D., Heintz, N., Le Novère, N. G., Greengard, P., Roussarie, J.-P., Girault, J.-A., 2020. Translational profiling of mouse dopaminoceptive neurons reveals a role of PGE2 in dorsal striatum. [PREPRINT] doi:10.1101/2020.09.02.279240
  • Araujo, M. P., Uribe, S., Robertson, M. D., Mendes, F. M., Raggio, D. P., Innes, N. P. T., 2020. "The Hall Technique and exfoliation of primary teeth: a retrospective cohort study." Br. Dent. J. 228, 213–217.
  • Aguilera-Muñoz, F., Uribe, S., Sandoval-Valdés, F., 2020. "Diagnostic Agreement of Bone Measurements for Dental Implants by Cone-Beam Computed Tomography." Int. J. Odontostomat. 14, 89–94.
2019
  • Alksere, B., Berzina, D., Dudorova, A., Conka, U., Andersone, S., Pimane, E., Krasucka, S., Blumberga, A., Dzalbs, A., Grinfelde, I., Vedmedovska, N., Fodina, V., Erenpreiss, J., 2019. Case of Inherited Partial AZFa Deletion without Impact on Male Fertility. Case Rep. Genet. 2019, 3802613.
  • Fodina, V., Dudorova, A., Alksere, B., Dzalbs, A., Vedmedovska, N., Andersone, S., Una, C., Juris, E., Dace, B., 2019. The application of PGT-A for carriers of balanced structural chromosomal rearrangements. Gynecol. Endocrinol. 35, 18–23.
  • Innes, N. P. T., Chu, C. H., Fontana, M., Lo, E. C. M., Thomson, W. M., Uribe, S., Heiland, M., Jepsen, S., Schwendicke, F., 2019. "A Century of Change towards Prevention and Minimal Intervention in Cariology." J. Dent. Res. 98, 611–617.
  • Uribe, S., 2019. "The Routine Use of 3D Imaging May Not Reduce the Risk of Injuries to the Alveolar Inferior Nerve During Third Molar Extraction." J. Evid. Based. Dent. Pract. 19, 89–90.
  • Vilne, B., Meistere, I., Grantiņa-Ieviņa, L., Ķibilds, J., 2019. "Machine Learning Approaches for Epidemiological Investigations of Food-Borne Disease Outbreaks." Front. Microbiol. 10, 1722.
2018
  • Volozonoka, L., Perminov, D., Korņejeva, L., Alkšere, B., Novikova, N., Pīmane, E. J., Blumberga, A., Kempa, I., Miskova, A., Gailīte, L., Fodina, V., 2018. Performance comparison of two whole genome amplification techniques in frame of multifactor preimplantation genetic testing. J. Assist. Reprod. Genet. 35, 1457–1472.
  • Clement, J., Uribe, S., Mariño, R. J., 2018. "Non-clinical Oral Health Practice Specialities", en: Mariño, R. J., Morgan, M. V., Walmsley, A. D. (Eds.), Career Paths in Oral Health. Springer International Publishing, Cham, pp. 95–104.
  • Fejerskov, O., Uribe, S., Mariño, R. J., 2018. "Dentistry in a Historical Perspective and a Likely Future of the Profession", en: Mariño, R. J., Morgan, M. V., Walmsley, A. D. (Eds.), Career Paths in Oral Health. Springer International Publishing, Cham, pp. 3–19.
  • Lira-Oetiker, M., Seguel-Galdames, F., Quero-Vallejos, I., Uribe, S., 2018. "Randomised clinical trial of patient satisfaction with traditional and simplified complete dentures." J. Oral Rehabil. 45, 386–392.
  • Lempiäinen, H., Brænne, I., Michoel, T., Tragante, V., Vilne, B., Webb, T. R., Kyriakou, T., Eichner, J., Zeng, L., Willenborg, C., Franzen, O., Ruusalepp, A., Goel, A., van der Laan, S. W., Biegert, C., Hamby, S., Talukdar, H.A., Foroughi Asl, H., CVgenes@target consortium, Pasterkamp, G., Watkins, H., Samani, N. J., Wittenberger, T., Erdmann, J., Schunkert, H., Asselbergs, F. W., Björkegren, J. L. M., 2018. "Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets." Sci. Rep. 8, 3434.
  • Vilne, B., Schunkert, H., 2018. "Integrating Genes Affecting Coronary Artery Disease in Functional Networks by Multi-OMICs Approach." Front Cardiovasc Med 5, 89.
  • Schunkert, H., von Scheidt, M., Kessler, T., Stiller, B., Zeng, L., Vilne, B., 2018. "Genetics of coronary artery disease in the light of genome-wide association studies." Clin. Res. Cardiol. 107, 2–9.
2017
  • Uribe, S., 2017. "Radiographic prediction of inferior alveolar nerve injury in third molar surgery." Evid. Based. Dent. 18, 88–89.
  • Vilne, B., Skogsberg, J., Foroughi Asl, H., Talukdar, H.A., Kessler, T., Björkegren, J. L. M., Schunkert, H., 2017. "Network analysis reveals a causal role of mitochondrial gene activity in atherosclerotic lesion formation." Atherosclerosis 267, 39–48.
  • Kessler, T., Wobst, J., Wolf, B., Eckhold, J., Vilne, B., Hollstein, R., von Ameln, S., Dang, T. A., Sager, H. B., Moritz Rumpf, P., Aherrahrou, R., Kastrati, A., Björkegren, J. L. M., Erdmann, J., Lusis, A. J., Civelek, M., Kaiser, F. J., Schunkert, H., 2017. "Functional Characterization of the GUCY1A3 Coronary Artery Disease Risk Locus." Circulation 136, 476–489.
2016
  • Senakola E, Maldupa I, Uribe S, Niznamovs M, 2016. "MUTES VESELĪBAS PĒTĪJUMS SKOLĒNIEM LATVIJĀ." The Centre for Disease Prevention and Control of Latvia.
  • Mariño, R., Ramos-Gómez, F., Manton, D. J., Onetto, J. E., Hugo, F., Feldens, C. A., Bedi, R., Uribe, S., Zillmann, G., 2016. "The future of pediatric dentistry education and curricula: a Chilean perspective." BMC Oral Health 17, 20.
  • Kessler, T., Erdmann, J., Vilne, B., Bruse, P., Kurowski, V., Diemert, P., Schunkert, H., Sager, H. B., 2016. "Serum microRNA-1233 is a specific biomarker for diagnosing acute pulmonary embolism." J. Transl. Med. 14, 120.
  • Kessler, T., Vilne, B., Schunkert, H., 2016. "The impact of genome-wide association studies on the pathophysiology and therapy of cardiovascular disease." EMBO Mol. Med. 8, 688–701.
2015
  • López, N. J., Uribe, S., Martinez, B., 2015. "Effect of periodontal treatment on preterm birth rate: a systematic review of meta-analyses." Periodontol. 2000 67, 87–130.
  • Franke, K., Vilne, B., Prazeres da Costa, O., Rudelius, M., Peschel, C., Oostendorp, R. A. J., Keller, U., 2015. "In vivo hematopoietic Myc activation directs a transcriptional signature in endothelial cells within the bone marrow microenvironment." Oncotarget 6, 21827–21839.
  • Istvánffy, R., Vilne, B., Schreck, C., Ruf, F., Pagel, C., Grziwok, S., Henkel, L., Prazeres da Costa, O., Berndt, J., Stümpflen, V., Götze, K. S., Schiemann, M., Peschel, C., Mewes, H.-W., Oostendorp, R. A. J., 2015. "Stroma-Derived Connective Tissue Growth Factor Maintains Cell Cycle Progression and Repopulation Activity of Hematopoietic Stem Cells In Vitro." Stem Cell Reports 5, 702–715.
  • Brænne, I., Civelek, M., Vilne, B., Di Narzo, A., Johnson, A. D., Zhao, Y., Reiz, B., Codoni, V., Webb, T. R., Foroughi Asl, H., Hamby, S. E., Zeng, L., Trégouët, D.-A., Hao, K., Topol, E. J., Schadt, E. E., Yang, X., Samani, N. J., Björkegren, J. L. M., Erdmann, J., Schunkert, H., Lusis, A. J., Leducq Consortium CAD Genomics‡, 2015. "Prediction of Causal Candidate Genes in Coronary Artery Disease Loci." Arterioscler. Thromb. Vasc. Biol. 35, 2207–2217.
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